CDS
| Accession Number | TCMCG005C33779 |
| gbkey | CDS |
| Protein Id | XP_020248432.1 |
| Location | complement(join(9763632..9763705,9766190..9766266,9769682..9769776,9770587..9770674,9770781..9770782)) |
| Gene | LOC109825925 |
| GeneID | 109825925 |
| Organism | Asparagus officinalis |
Protein
| Length | 111aa |
| Molecule type | protein |
| Topology | linear |
| Data_file_division | PLN |
| dblink | BioProject:PRJNA376608; |
| db_source | XM_020392843.1 |
| Definition | transcription and mRNA export factor SUS1 |
EGGNOG-MAPPER Annotation
| COG_category | K |
| Description | Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex functions in docking export-competent ribonucleoprotein particles (mRNPs) to the nuclear entrance of the nuclear pore complex (nuclear basket). TREX-2 participates in mRNA export and accurate chromatin positioning in the nucleus by tethering genes to the nuclear periphery |
| KEGG_TC | - |
| KEGG_Module | - |
| KEGG_Reaction | - |
| KEGG_rclass | - |
| BRITE |
ko00000
[VIEW IN KEGG] ko03019 [VIEW IN KEGG] ko03021 [VIEW IN KEGG] ko03036 [VIEW IN KEGG] |
| KEGG_ko |
ko:K11368
[VIEW IN KEGG] |
| EC | - |
| KEGG_Pathway | - |
| GOs | - |
Sequence
| CDS: ATGAGGGCTTCGATCAATCGTCCTCCGACGCCGGATGCTGAAGAGGAGCCGGAGCGAGAGCCAACCCTTCAAGAGATTATCAATATCAAGATGATCGAAAGTGGGGAGAAGGAGAAATTGATGGAGCTCTTAAGAGAAAGGCTCATTGAATGTGGCTGGAGGGATGAAATGAAAGCTCTTTGCAGGGCCTACGCAAGGAAGAAAGGGAGAAATAATGTCACAGTAGACGACCTTATAGATGTTATTACTCCAAAAGGCAGAGCGTCAGTGCCTGATTCTGTGAAGGCTGAGCTATTGCAACGCATTAGATCATTCCTCATGGCAGCTGCACTCTGA |
| Protein: MRASINRPPTPDAEEEPEREPTLQEIINIKMIESGEKEKLMELLRERLIECGWRDEMKALCRAYARKKGRNNVTVDDLIDVITPKGRASVPDSVKAELLQRIRSFLMAAAL |